Forums » Requests

Gene Expression in R

Submitted by steve_bischoff on Wed, 06/09/2010 - 15:55
Posted in

Packages to add that would be helpful:

PMID: 20371495 : Modular analysis of gene expression data with R.
http://www.ncbi.nlm.nih.gov/pubmed/20371495

PMID: 20459806

PMID: 20338898

PMID: 20193058 MADAM - An open source meta-analysis toolbox for R and Bioconductor.

PMID: 20459804
R code for Levenberg-Marquardt minimization of MLE
http://www.nature.com/nmeth/journal/v7/n5/suppinfo/nmeth0510-338_S1.html

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Submitted by covingto on Mon, 06/14/2010 - 18:04.

I just uploaded a new version of the affy package with biweights added. This widget makes the biweights fit and sends it as a Model Fit (which acts like a list).

Submitted by covingto on Wed, 06/09/2010 - 16:52.

Wow this will be a lot of work.

Have the authors been contacted to see if they would like to adapt their packages for Red-R? (I'm happy to help but I want to make sure I'm getting things right).